DBNascent | Samples

SRR1544609 Sample ID 1961

**Data sources**
Paper identifier	Nojima2015mammalian
SRP	SRP045447
Samples	SRR1544609

**Technical details**
QC score	1
Replicate	1
Protocol	NET-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	240 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct	siRNA Cpsf73

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	mNET-seq with CMA602 PolII antibody
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	51
Read depth after trimming	69,543,799
Duplication proportion	0.45879
Proportion reads mapped	0.8669
Exon/intron ratio	6.56555
Unique read proportion	0.56231

**Bidirectionals**
Total # Tfit bidirectionals	29223
# Promoter Tfit bidirectionals	12353
# Intronic Tfit bidirectionals	11698
# Intergenic Tfit bidirectionals	4125
Total # dREG bidirectionals	27786
# Promoter dREG bidirectionals	7289
# Intronic dREG bidirectionals	12272
# Intergenic dREG bidirectionals	7167
Part of Tfit master merge?	False
Part of dREG master merge?	False