DBNascent | Samples

SRR1544613 Sample ID 1966

**Data sources**
Paper identifier	Nojima2015mammalian
SRP accession	SRP045447
GEO accession	GSE60358
Samples	SRR1544613

**Technical details**
QC score	1
Replicate	1
Protocol	RNA-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	286 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	797 Kb
dREG bidirectional regions	BED file	359 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct	siRNA Cpsf73

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	chRNAseq
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	33,206,296
Duplication proportion	0.05928
Proportion reads mapped	0.9491
Exon/intron ratio	2.89086
Unique read proportion	0.8857

**Bidirectionals**
Total # Tfit bidirectionals	9118
# Promoter Tfit bidirectionals	4008
# Intronic Tfit bidirectionals	3525
# Intergenic Tfit bidirectionals	810
Total # dREG bidirectionals	8314
# Promoter dREG bidirectionals	3567
# Intronic dREG bidirectionals	3435
# Intergenic dREG bidirectionals	1070
Part of Tfit master merge?	False
Part of dREG master merge?	False