DBNascent | Samples

SRR1552480 Sample ID 489

**Data sources**
Paper identifier	Core2014analysis
SRP	SRP045537
Samples	SRR1552480

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-cap
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	55 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Sample treated with tobacco acid pyrophosphatase (TAP) during library prep
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	4
Raw read length	50
Read depth after trimming	36,901,127
Duplication proportion	0.84217
Proportion reads mapped	0.9326
Exon/intron ratio	8.85766
Unique read proportion	0.26917

**Bidirectionals**
Total # Tfit bidirectionals	43523
# Promoter Tfit bidirectionals	12786
# Intronic Tfit bidirectionals	18155
# Intergenic Tfit bidirectionals	12953
Total # dREG bidirectionals	40837
# Promoter dREG bidirectionals	11619
# Intronic dREG bidirectionals	16952
# Intergenic dREG bidirectionals	12531
Part of Tfit master merge?	False
Part of dREG master merge?	False