DBNascent | Samples

SRR1552481 Sample ID 490

**Data sources**
Paper identifier	Core2014analysis
SRP	SRP045537
Samples	SRR1552481

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-cap
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	34 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	757 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	18,771,966
Duplication proportion	0.83493
Proportion reads mapped	0.8947
Exon/intron ratio	4.82486
Unique read proportion	0.24143

**Bidirectionals**
Total # Tfit bidirectionals	17338
# Promoter Tfit bidirectionals	8060
# Intronic Tfit bidirectionals	6327
# Intergenic Tfit bidirectionals	3002
Total # dREG bidirectionals	17619
# Promoter dREG bidirectionals	9352
# Intronic dREG bidirectionals	5656
# Intergenic dREG bidirectionals	3205
Part of Tfit master merge?	False
Part of dREG master merge?	False