DBNascent | Samples

SRR1552483 Sample ID 492

**Data sources**
Paper identifier	Core2014analysis
SRP accession	SRP045537
GEO accession	GSE60453
Samples	SRR1552483

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-cap
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	22 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	604 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	GM12878
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	50
Read depth after trimming	11,312,598
Duplication proportion	0.83759
Proportion reads mapped	0.8814
Exon/intron ratio	6.38843
Unique read proportion	0.17115

**Bidirectionals**
Total # Tfit bidirectionals	14244
# Promoter Tfit bidirectionals	7057
# Intronic Tfit bidirectionals	5598
# Intergenic Tfit bidirectionals	1768
Total # dREG bidirectionals	14059
# Promoter dREG bidirectionals	8367
# Intronic dREG bidirectionals	4479
# Intergenic dREG bidirectionals	1637
Part of Tfit master merge?	False
Part of dREG master merge?	False