DBNascent | Samples

SRR1552484 Sample ID 493

**Data sources**
Paper identifier	Core2014analysis
SRP	SRP045538
Samples	SRR1552484

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	86 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	787 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	23,068,567
Duplication proportion	0.38257
Proportion reads mapped	0.8294
Exon/intron ratio	2.4302
Unique read proportion	0.68368

**Bidirectionals**
Total # Tfit bidirectionals	23247
# Promoter Tfit bidirectionals	8512
# Intronic Tfit bidirectionals	9831
# Intergenic Tfit bidirectionals	4441
Total # dREG bidirectionals	18289
# Promoter dREG bidirectionals	8127
# Intronic dREG bidirectionals	6109
# Intergenic dREG bidirectionals	4095
Part of Tfit master merge?	False
Part of dREG master merge?	False