DBNascent | Samples

SRR1552485 Sample ID 494

**Data sources**
Paper identifier	Core2014analysis
SRP accession	SRP045538
GEO accession	GSE60454
Samples	SRR1552485

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	399 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	GM12878
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	100
Read depth after trimming	165,033,535
Duplication proportion	0.60446
Proportion reads mapped	0.9026
Exon/intron ratio	2.65126
Unique read proportion	0.72983

**Bidirectionals**
Total # Tfit bidirectionals	49013
# Promoter Tfit bidirectionals	17109
# Intronic Tfit bidirectionals	19515
# Intergenic Tfit bidirectionals	12037
Total # dREG bidirectionals	54332
# Promoter dREG bidirectionals	9769
# Intronic dREG bidirectionals	27425
# Intergenic dREG bidirectionals	15498
Part of Tfit master merge?	False
Part of dREG master merge?	False