DBNascent | Samples

SRR1560531 Sample ID 933

**Data sources**
Paper identifier	Hah2015inflammation
SRP	SRP045840
Samples	SRR1560531

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	197 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	81,090,965
Duplication proportion	0.42701
Proportion reads mapped	0.6986
Exon/intron ratio	2.76402
Unique read proportion	0.7212

**Bidirectionals**
Total # Tfit bidirectionals	37385
# Promoter Tfit bidirectionals	14488
# Intronic Tfit bidirectionals	10810
# Intergenic Tfit bidirectionals	10066
Total # dREG bidirectionals	36922
# Promoter dREG bidirectionals	7757
# Intronic dREG bidirectionals	15534
# Intergenic dREG bidirectionals	10997
Part of Tfit master merge?	True
Part of dREG master merge?	True