DBNascent | Samples

SRR1560532 Sample ID 934

**Data sources**
Paper identifier	Hah2015inflammation
SRP	SRP045840
Samples	SRR1560532

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	49 Mb
Stranded gene read counts	TXT file	910 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	668 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	15,561,350
Duplication proportion	0.42539
Proportion reads mapped	0.6381
Exon/intron ratio	1.52976
Unique read proportion	0.60135

**Bidirectionals**
Total # Tfit bidirectionals	25161
# Promoter Tfit bidirectionals	5327
# Intronic Tfit bidirectionals	12030
# Intergenic Tfit bidirectionals	5298
Total # dREG bidirectionals	15512
# Promoter dREG bidirectionals	4806
# Intronic dREG bidirectionals	5998
# Intergenic dREG bidirectionals	3696
Part of Tfit master merge?	True
Part of dREG master merge?	True