DBNascent | Samples

SRR1560533 Sample ID 935

**Data sources**
Paper identifier	Hah2015inflammation
SRP	SRP045840
Samples	SRR1560533

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	179 Mb
Stranded gene read counts	TXT file	922 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	lipopolysaccharide (100 ng/mL)	-20 min	0 min	20 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	76,863,841
Duplication proportion	0.45532
Proportion reads mapped	0.7088
Exon/intron ratio	2.59705
Unique read proportion	0.68613

**Bidirectionals**
Total # Tfit bidirectionals	32670
# Promoter Tfit bidirectionals	12233
# Intronic Tfit bidirectionals	9608
# Intergenic Tfit bidirectionals	8935
Total # dREG bidirectionals	32899
# Promoter dREG bidirectionals	7341
# Intronic dREG bidirectionals	13703
# Intergenic dREG bidirectionals	9551
Part of Tfit master merge?	True
Part of dREG master merge?	True