DBNascent | Samples

SRR1560534 Sample ID 936

**Data sources**
Paper identifier	Hah2015inflammation
SRP	SRP045840
Samples	SRR1560534

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	48 Mb
Stranded gene read counts	TXT file	909 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	527 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	lipopolysaccharide (100 ng/mL)	-20 min	0 min	20 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	15,300,775
Duplication proportion	0.43458
Proportion reads mapped	0.6412
Exon/intron ratio	1.6004
Unique read proportion	0.59521

**Bidirectionals**
Total # Tfit bidirectionals	20488
# Promoter Tfit bidirectionals	4316
# Intronic Tfit bidirectionals	9612
# Intergenic Tfit bidirectionals	4458
Total # dREG bidirectionals	12228
# Promoter dREG bidirectionals	3907
# Intronic dREG bidirectionals	4682
# Intergenic dREG bidirectionals	2950
Part of Tfit master merge?	True
Part of dREG master merge?	True