DBNascent | Samples

SRR1560535 Sample ID 937

**Data sources**
Paper identifier	Hah2015inflammation
SRP accession	SRP045840
GEO accession	GSE60857
Samples	SRR1560535

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	142 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	lipopolysaccharide (100 ng/mL)	-60 min	0 min	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	69,567,632
Duplication proportion	0.49539
Proportion reads mapped	0.6688
Exon/intron ratio	2.79514
Unique read proportion	0.62843

**Bidirectionals**
Total # Tfit bidirectionals	30931
# Promoter Tfit bidirectionals	11739
# Intronic Tfit bidirectionals	9663
# Intergenic Tfit bidirectionals	7733
Total # dREG bidirectionals	29921
# Promoter dREG bidirectionals	7235
# Intronic dREG bidirectionals	12439
# Intergenic dREG bidirectionals	8069
Part of Tfit master merge?	True
Part of dREG master merge?	True