DBNascent | Samples

SRR1560536 Sample ID 938

**Data sources**
Paper identifier	Hah2015inflammation
SRP	SRP045840
Samples	SRR1560536

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	49 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	559 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	lipopolysaccharide (100 ng/mL)	-60 min	0 min	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	20,232,646
Duplication proportion	0.55235
Proportion reads mapped	0.5977
Exon/intron ratio	1.47096
Unique read proportion	0.50754

**Bidirectionals**
Total # Tfit bidirectionals	19647
# Promoter Tfit bidirectionals	3641
# Intronic Tfit bidirectionals	10029
# Intergenic Tfit bidirectionals	4153
Total # dREG bidirectionals	12967
# Promoter dREG bidirectionals	3232
# Intronic dREG bidirectionals	5941
# Intergenic dREG bidirectionals	3097
Part of Tfit master merge?	True
Part of dREG master merge?	True