DBNascent | Samples

SRR1574538 Sample ID 428

**Data sources**
Paper identifier	Chen2014gene
SRP accession	SRP047084
GEO accession	GSE61393
Samples	SRR1574538

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	35 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	335 Kb
dREG bidirectional regions	BED file	59 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	H1
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	16,049,646
Duplication proportion	0.58433
Proportion reads mapped	0.6115
Exon/intron ratio	3.24335
Unique read proportion	0.4209

**Bidirectionals**
Total # Tfit bidirectionals	3847
# Promoter Tfit bidirectionals	1434
# Intronic Tfit bidirectionals	1738
# Intergenic Tfit bidirectionals	285
Total # dREG bidirectionals	1370
# Promoter dREG bidirectionals	757
# Intronic dREG bidirectionals	384
# Intergenic dREG bidirectionals	256
Part of Tfit master merge?	True
Part of dREG master merge?	True