DBNascent | Samples

SRR1574539 Sample ID 429

**Data sources**
Paper identifier	Chen2014gene
SRP	SRP047084
Samples	SRR1574539

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	38 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	435 Kb
dREG bidirectional regions	BED file	87 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	H1
Strain
Genotype
Construct	siRNA Ssu72

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	19,203,603
Duplication proportion	0.61003
Proportion reads mapped	0.6034
Exon/intron ratio	3.53287
Unique read proportion	0.40147

**Bidirectionals**
Total # Tfit bidirectionals	5005
# Promoter Tfit bidirectionals	1825
# Intronic Tfit bidirectionals	2100
# Intergenic Tfit bidirectionals	398
Total # dREG bidirectionals	2040
# Promoter dREG bidirectionals	1218
# Intronic dREG bidirectionals	540
# Intergenic dREG bidirectionals	324
Part of Tfit master merge?	True
Part of dREG master merge?	True