Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR1574539 Sample ID 429
| Paper identifier | Chen2014gene |
| SRP accession | SRP047084 |
| GEO accession | GSE61393 |
| Samples | SRR1574539 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | H1 |
| Strain | |
| Genotype | |
| Construct | siRNA Ssu72 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 19,203,603 |
| Duplication proportion | 0.61003 |
| Proportion reads mapped | 0.6034 |
| Exon/intron ratio | 3.53287 |
| Unique read proportion | 0.40147 |
| Total # Tfit bidirectionals | 5005 |
| # Promoter Tfit bidirectionals | 1825 |
| # Intronic Tfit bidirectionals | 2100 |
| # Intergenic Tfit bidirectionals | 398 |
| Total # dREG bidirectionals | 2040 |
| # Promoter dREG bidirectionals | 1218 |
| # Intronic dREG bidirectionals | 540 |
| # Intergenic dREG bidirectionals | 324 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |