DBNascent | Samples

SRR1596500 Sample ID 83

**Data sources**
Paper identifier	Andersson2014nuclear
SRP accession	SRP048625
GEO accession	GSE62046
Samples	SRR1596500

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	77 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	982 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	21,245,348
Duplication proportion	0.41855
Proportion reads mapped	0.8158
Exon/intron ratio	4.88301
Unique read proportion	0.63861

**Bidirectionals**
Total # Tfit bidirectionals	29942
# Promoter Tfit bidirectionals	10076
# Intronic Tfit bidirectionals	13016
# Intergenic Tfit bidirectionals	6225
Total # dREG bidirectionals	22609
# Promoter dREG bidirectionals	8915
# Intronic dREG bidirectionals	8705
# Intergenic dREG bidirectionals	4697
Part of Tfit master merge?	True
Part of dREG master merge?	True