DBNascent | Samples

SRR1596501 Sample ID 84

**Data sources**
Paper identifier	Andersson2014nuclear
SRP	SRP048625
Samples	SRR1596501

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	107 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	32,981,725
Duplication proportion	0.42313
Proportion reads mapped	0.8375
Exon/intron ratio	2.80374
Unique read proportion	0.70494

**Bidirectionals**
Total # Tfit bidirectionals	32936
# Promoter Tfit bidirectionals	10820
# Intronic Tfit bidirectionals	14189
# Intergenic Tfit bidirectionals	7806
Total # dREG bidirectionals	27181
# Promoter dREG bidirectionals	9120
# Intronic dREG bidirectionals	11350
# Intergenic dREG bidirectionals	6721
Part of Tfit master merge?	True
Part of dREG master merge?	True