DBNascent | Samples

SRR1609864 Sample ID 1469

**Data sources**
Paper identifier	Li2015condensin
SRP accession	SRP048811
GEO accession	GSE62228
Samples	SRR1609864

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	99 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	784 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Stated as control for siNCAPG expt, may not be different from other control
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	47,887,669
Duplication proportion	0.66214
Proportion reads mapped	0.8717
Exon/intron ratio	3.6271
Unique read proportion	0.38691

**Bidirectionals**
Total # Tfit bidirectionals	24924
# Promoter Tfit bidirectionals	11159
# Intronic Tfit bidirectionals	9858
# Intergenic Tfit bidirectionals	3697
Total # dREG bidirectionals	18065
# Promoter dREG bidirectionals	8150
# Intronic dREG bidirectionals	6783
# Intergenic dREG bidirectionals	3161
Part of Tfit master merge?	True
Part of dREG master merge?	True