DBNascent | Samples

SRR1609865 Sample ID 1469

**Data sources**
Paper identifier	Li2015condensin
SRP	SRP048811
Samples	SRR1609865

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	133 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	886 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA Ncapg

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	49,153,270
Duplication proportion	0.50181
Proportion reads mapped	0.8619
Exon/intron ratio	2.56414
Unique read proportion	0.55035

**Bidirectionals**
Total # Tfit bidirectionals	23643
# Promoter Tfit bidirectionals	9268
# Intronic Tfit bidirectionals	9778
# Intergenic Tfit bidirectionals	4652
Total # dREG bidirectionals	20448
# Promoter dREG bidirectionals	8062
# Intronic dREG bidirectionals	8388
# Intergenic dREG bidirectionals	4235
Part of Tfit master merge?	True
Part of dREG master merge?	True