DBNascent | Samples

SRR1609866 Sample ID 1471

**Data sources**
Paper identifier	Li2015condensin
SRP accession	SRP048811
GEO accession	GSE62228
Samples	SRR1609866

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	97 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	682 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA Ncapg

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	42,074,578
Duplication proportion	0.58405
Proportion reads mapped	0.8546
Exon/intron ratio	2.74362
Unique read proportion	0.44766

**Bidirectionals**
Total # Tfit bidirectionals	20103
# Promoter Tfit bidirectionals	8385
# Intronic Tfit bidirectionals	8246
# Intergenic Tfit bidirectionals	3247
Total # dREG bidirectionals	15765
# Promoter dREG bidirectionals	7191
# Intronic dREG bidirectionals	6137
# Intergenic dREG bidirectionals	2751
Part of Tfit master merge?	True
Part of dREG master merge?	True