DBNascent | Samples

SRR1609867 Sample ID 1471

**Data sources**
Paper identifier	Li2015condensin
SRP	SRP048811
Samples	SRR1609867

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	58 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	509 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Stated as control for siNCAPD3 expt, may not be different from other control
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	24,258,786
Duplication proportion	0.64579
Proportion reads mapped	0.9081
Exon/intron ratio	3.42241
Unique read proportion	0.37217

**Bidirectionals**
Total # Tfit bidirectionals	16851
# Promoter Tfit bidirectionals	7307
# Intronic Tfit bidirectionals	6879
# Intergenic Tfit bidirectionals	2445
Total # dREG bidirectionals	11801
# Promoter dREG bidirectionals	6352
# Intronic dREG bidirectionals	3894
# Intergenic dREG bidirectionals	1786
Part of Tfit master merge?	True
Part of dREG master merge?	True