DBNascent | Samples

SRR1609868 Sample ID 1473

**Data sources**
Paper identifier	Li2015condensin
SRP accession	SRP048811
GEO accession	GSE62228
Samples	SRR1609868

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	82 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	687 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Stated as control for siNCAPD3 expt, may not be different from other control
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	41,101,680
Duplication proportion	0.67423
Proportion reads mapped	0.9072
Exon/intron ratio	3.37484
Unique read proportion	0.35575

**Bidirectionals**
Total # Tfit bidirectionals	21364
# Promoter Tfit bidirectionals	9031
# Intronic Tfit bidirectionals	8562
# Intergenic Tfit bidirectionals	3458
Total # dREG bidirectionals	15891
# Promoter dREG bidirectionals	7290
# Intronic dREG bidirectionals	5990
# Intergenic dREG bidirectionals	2687
Part of Tfit master merge?	True
Part of dREG master merge?	True