DBNascent | Samples

SRR1609869 Sample ID 1473

**Data sources**
Paper identifier	Li2015condensin
SRP	SRP048811
Samples	SRR1609869

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	52 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	455 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA Ncapd3

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	32,759,632
Duplication proportion	0.77909
Proportion reads mapped	0.8963
Exon/intron ratio	3.37204
Unique read proportion	0.24683

**Bidirectionals**
Total # Tfit bidirectionals	15406
# Promoter Tfit bidirectionals	7266
# Intronic Tfit bidirectionals	6085
# Intergenic Tfit bidirectionals	1606
Total # dREG bidirectionals	10565
# Promoter dREG bidirectionals	6192
# Intronic dREG bidirectionals	3266
# Intergenic dREG bidirectionals	1211
Part of Tfit master merge?	True
Part of dREG master merge?	True