DBNascent | Samples

SRR1609870 Sample ID 1474

**Data sources**
Paper identifier	Li2015condensin
SRP	SRP048811
Samples	SRR1609870

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	89 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	782 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA Ncapd3

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	38,843,627
Duplication proportion	0.62066
Proportion reads mapped	0.9142
Exon/intron ratio	3.3061
Unique read proportion	0.41575

**Bidirectionals**
Total # Tfit bidirectionals	24513
# Promoter Tfit bidirectionals	9665
# Intronic Tfit bidirectionals	9917
# Intergenic Tfit bidirectionals	4608
Total # dREG bidirectionals	18054
# Promoter dREG bidirectionals	7726
# Intronic dREG bidirectionals	7037
# Intergenic dREG bidirectionals	3324
Part of Tfit master merge?	True
Part of dREG master merge?	True