DBNascent | Samples

SRR1611829 Sample ID 1825

**Data sources**
Paper identifier	Meng2014convergent
SRP accession	SRP048895
GEO accession	GSE62296
Samples	SRR1611829

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	89 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	886 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic B cell
Clone/Individual
Strain
Genotype	Vhb18 heavy chain knock-in
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	81,808,241
Duplication proportion	0.82821
Proportion reads mapped	0.7961
Exon/intron ratio	2.64557
Unique read proportion	0.55067

**Bidirectionals**
Total # Tfit bidirectionals	14995
# Promoter Tfit bidirectionals	4530
# Intronic Tfit bidirectionals	6175
# Intergenic Tfit bidirectionals	2795
Total # dREG bidirectionals	20446
# Promoter dREG bidirectionals	6864
# Intronic dREG bidirectionals	8064
# Intergenic dREG bidirectionals	4248
Part of Tfit master merge?	True
Part of dREG master merge?	True