DBNascent | Samples

SRR1611830 Sample ID 1826

**Data sources**
Paper identifier	Meng2014convergent
SRP accession	SRP048895
GEO accession	GSE62296
Samples	SRR1611830

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	111 Mb
Stranded gene read counts	TXT file	930 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	823 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic B cell
Clone/Individual
Strain
Genotype	Vhb18 heavy chain knock-in
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	150,122,447
Duplication proportion	0.91485
Proportion reads mapped	0.9193
Exon/intron ratio	2.5015
Unique read proportion	0.52535

**Bidirectionals**
Total # Tfit bidirectionals	14986
# Promoter Tfit bidirectionals	3486
# Intronic Tfit bidirectionals	6964
# Intergenic Tfit bidirectionals	2888
Total # dREG bidirectionals	19064
# Promoter dREG bidirectionals	5652
# Intronic dREG bidirectionals	7544
# Intergenic dREG bidirectionals	4393
Part of Tfit master merge?	True
Part of dREG master merge?	True