DBNascent | Samples

SRR1611832 Sample ID 1828

**Data sources**
Paper identifier	Meng2014convergent
SRP accession	SRP048895
GEO accession	GSE62296
Samples	SRR1611832

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	95 Mb
Stranded gene read counts	TXT file	934 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	715 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic germinal center B cell
Clone/Individual
Strain
Genotype	Vhb18 heavy chain knock-in
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	51
Read depth after trimming	168,559,805
Duplication proportion	0.93167
Proportion reads mapped	0.8421
Exon/intron ratio	2.73425
Unique read proportion	0.54071

**Bidirectionals**
Total # Tfit bidirectionals	18841
# Promoter Tfit bidirectionals	5962
# Intronic Tfit bidirectionals	7441
# Intergenic Tfit bidirectionals	3312
Total # dREG bidirectionals	16499
# Promoter dREG bidirectionals	5474
# Intronic dREG bidirectionals	5956
# Intergenic dREG bidirectionals	3532
Part of Tfit master merge?	True
Part of dREG master merge?	True