DBNascent | Samples

SRR1611833 Sample ID 1829

**Data sources**
Paper identifier	Meng2014convergent
SRP accession	SRP048895
GEO accession	GSE62296
Samples	SRR1611833

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	123 Mb
Stranded gene read counts	TXT file	934 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	879 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic germinal center B cell
Clone/Individual
Strain
Genotype	Vhb18 heavy chain knock-in
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	198,305,796
Duplication proportion	0.92827
Proportion reads mapped	0.9037
Exon/intron ratio	2.48177
Unique read proportion	0.52146

**Bidirectionals**
Total # Tfit bidirectionals	19832
# Promoter Tfit bidirectionals	4617
# Intronic Tfit bidirectionals	9449
# Intergenic Tfit bidirectionals	3881
Total # dREG bidirectionals	20322
# Promoter dREG bidirectionals	5658
# Intronic dREG bidirectionals	8535
# Intergenic dREG bidirectionals	4634
Part of Tfit master merge?	True
Part of dREG master merge?	True