DBNascent | Samples

SRR1611834 Sample ID 1830

**Data sources**
Paper identifier	Meng2014convergent
SRP accession	SRP048895
GEO accession	GSE62296
Samples	SRR1611834

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	122 Mb
Stranded gene read counts	TXT file	937 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	923 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic germinal center B cell
Clone/Individual
Strain
Genotype	Vhb18 heavy chain knock-in
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	194,514,819
Duplication proportion	0.9265
Proportion reads mapped	0.8804
Exon/intron ratio	2.63675
Unique read proportion	0.50661

**Bidirectionals**
Total # Tfit bidirectionals	18911
# Promoter Tfit bidirectionals	4455
# Intronic Tfit bidirectionals	8846
# Intergenic Tfit bidirectionals	3592
Total # dREG bidirectionals	21383
# Promoter dREG bidirectionals	5949
# Intronic dREG bidirectionals	9208
# Intergenic dREG bidirectionals	4529
Part of Tfit master merge?	True
Part of dREG master merge?	True