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SRR1611835 Sample ID 1831
| Paper identifier | Meng2014convergent |
| SRP accession | SRP048895 |
| GEO accession | GSE62296 |
| Samples | SRR1611835 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 273 Mb |
| Stranded gene read counts | TXT file | 932 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | splenic B cell |
| Clone/Individual | |
| Strain | |
| Genotype | Vhb18 heavy chain knock-in |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | anti-CD40 (500 ng/mL) | -60 hr | 0 hr | 60 hr |
| treatment | interleukin-4 (25 ng/mL) | -60 hr | 0 hr | 60 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 178,627,917 |
| Duplication proportion | 0.72479 |
| Proportion reads mapped | 0.803 |
| Exon/intron ratio | 2.59426 |
| Unique read proportion | 0.64419 |
| Total # Tfit bidirectionals | 28158 |
| # Promoter Tfit bidirectionals | 8666 |
| # Intronic Tfit bidirectionals | 10805 |
| # Intergenic Tfit bidirectionals | 6228 |
| Total # dREG bidirectionals | 37986 |
| # Promoter dREG bidirectionals | 7410 |
| # Intronic dREG bidirectionals | 16532 |
| # Intergenic dREG bidirectionals | 11252 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |