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SRR1611837 Sample ID 1833
| Paper identifier | Meng2014convergent |
| SRP accession | SRP048895 |
| GEO accession | GSE62296 |
| Samples | SRR1611837 |
| QC score | 3 |
| Replicate | 3 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 234 Mb |
| Stranded gene read counts | TXT file | 935 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | splenic B cell |
| Clone/Individual | |
| Strain | |
| Genotype | Vhb18 heavy chain knock-in |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | anti-CD40 (500 ng/mL) | -60 hr | 0 hr | 60 hr |
| treatment | interleukin-4 (25 ng/mL) | -60 hr | 0 hr | 60 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 162,988,636 |
| Duplication proportion | 0.76626 |
| Proportion reads mapped | 0.8207 |
| Exon/intron ratio | 2.82047 |
| Unique read proportion | 0.7179 |
| Total # Tfit bidirectionals | 31121 |
| # Promoter Tfit bidirectionals | 10059 |
| # Intronic Tfit bidirectionals | 11577 |
| # Intergenic Tfit bidirectionals | 6669 |
| Total # dREG bidirectionals | 37659 |
| # Promoter dREG bidirectionals | 7551 |
| # Intronic dREG bidirectionals | 15841 |
| # Intergenic dREG bidirectionals | 11021 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |