DBNascent | Samples

SRR1611837 Sample ID 1832

**Data sources**
Paper identifier	Meng2014convergent
SRP	SRP048895
Samples	SRR1611837

**Technical details**
QC score	3
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	234 Mb
Stranded gene read counts	TXT file	935 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic B cell
Clone/Individual
Strain
Genotype	Vhb18 heavy chain knock-in
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	anti-CD40 (500 ng/mL)	-60 hr	0 hr	60 hr
treatment	interleukin-4 (25 ng/mL)	-60 hr	0 hr	60 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	162,988,636
Duplication proportion	0.76626
Proportion reads mapped	0.8207
Exon/intron ratio	2.82047
Unique read proportion	0.7179

**Bidirectionals**
Total # Tfit bidirectionals	31121
# Promoter Tfit bidirectionals	10059
# Intronic Tfit bidirectionals	11577
# Intergenic Tfit bidirectionals	6669
Total # dREG bidirectionals	37659
# Promoter dREG bidirectionals	7551
# Intronic dREG bidirectionals	15841
# Intergenic dREG bidirectionals	11021
Part of Tfit master merge?	True
Part of dREG master merge?	True