DBNascent | Samples

SRR1611838 Sample ID 1833

**Data sources**
Paper identifier	Meng2014convergent
SRP	SRP048895
Samples	SRR1611838

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	211 Mb
Stranded gene read counts	TXT file	939 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain
Genotype	Aid -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	137,118,204
Duplication proportion	0.7706
Proportion reads mapped	0.9356
Exon/intron ratio	2.13112
Unique read proportion	0.71811

**Bidirectionals**
Total # Tfit bidirectionals	26362
# Promoter Tfit bidirectionals	7410
# Intronic Tfit bidirectionals	10442
# Intergenic Tfit bidirectionals	5269
Total # dREG bidirectionals	30991
# Promoter dREG bidirectionals	6190
# Intronic dREG bidirectionals	13226
# Intergenic dREG bidirectionals	8297
Part of Tfit master merge?	True
Part of dREG master merge?	True