DBNascent | Samples

SRR1611839 Sample ID 1835

**Data sources**
Paper identifier	Meng2014convergent
SRP accession	SRP048895
GEO accession	GSE62296
Samples	SRR1611839

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	195 Mb
Stranded gene read counts	TXT file	939 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain
Genotype	Aid -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	127,082,878
Duplication proportion	0.77115
Proportion reads mapped	0.9368
Exon/intron ratio	2.20222
Unique read proportion	0.71829

**Bidirectionals**
Total # Tfit bidirectionals	27723
# Promoter Tfit bidirectionals	8021
# Intronic Tfit bidirectionals	10776
# Intergenic Tfit bidirectionals	5490
Total # dREG bidirectionals	29598
# Promoter dREG bidirectionals	6361
# Intronic dREG bidirectionals	12155
# Intergenic dREG bidirectionals	7719
Part of Tfit master merge?	True
Part of dREG master merge?	True