DBNascent | Samples

SRR1611840 Sample ID 1836

**Data sources**
Paper identifier	Meng2014convergent
SRP accession	SRP048895
GEO accession	GSE62296
Samples	SRR1611840

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	285 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Ramos
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	106,118,963
Duplication proportion	0.59525
Proportion reads mapped	0.9325
Exon/intron ratio	2.37301
Unique read proportion	0.80648

**Bidirectionals**
Total # Tfit bidirectionals	36385
# Promoter Tfit bidirectionals	11296
# Intronic Tfit bidirectionals	16196
# Intergenic Tfit bidirectionals	7330
Total # dREG bidirectionals	35209
# Promoter dREG bidirectionals	6622
# Intronic dREG bidirectionals	16806
# Intergenic dREG bidirectionals	10405
Part of Tfit master merge?	True
Part of dREG master merge?	True