DBNascent | Samples

SRR1648888 Sample ID 2089

**Data sources**
Paper identifier	Puc2015ligand
SRP accession	SRP049720
GEO accession	GSE63202
Samples	SRR1648888

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	75 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	466 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA Top1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	28,258,592
Duplication proportion	0.62822
Proportion reads mapped	0.9456
Exon/intron ratio	2.36252
Unique read proportion	0.39939

**Bidirectionals**
Total # Tfit bidirectionals	14652
# Promoter Tfit bidirectionals	7472
# Intronic Tfit bidirectionals	5347
# Intergenic Tfit bidirectionals	1727
Total # dREG bidirectionals	10843
# Promoter dREG bidirectionals	6312
# Intronic dREG bidirectionals	3467
# Intergenic dREG bidirectionals	1389
Part of Tfit master merge?	True
Part of dREG master merge?	True