DBNascent | Samples

SRR1648895 Sample ID 2095

**Data sources**
Paper identifier	Puc2015ligand
SRP	SRP049720
Samples	SRR1648895

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	71 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	423 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA Nkx3-1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	22,685,121
Duplication proportion	0.57457
Proportion reads mapped	0.9458
Exon/intron ratio	2.25569
Unique read proportion	0.4446

**Bidirectionals**
Total # Tfit bidirectionals	12874
# Promoter Tfit bidirectionals	6829
# Intronic Tfit bidirectionals	4633
# Intergenic Tfit bidirectionals	1448
Total # dREG bidirectionals	9840
# Promoter dREG bidirectionals	6021
# Intronic dREG bidirectionals	2976
# Intergenic dREG bidirectionals	1187
Part of Tfit master merge?	True
Part of dREG master merge?	True