DBNascent | Samples

SRR1648904 Sample ID 2099

**Data sources**
Paper identifier	Puc2015ligand
SRP accession	SRP049720
GEO accession	GSE63202
Samples	SRR1648904

**Technical details**
QC score	5
Replicate	1
Protocol	PRO-cap
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	16 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	707 Kb
dREG bidirectional regions	BED file	348 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	3
Raw read length	51
Read depth after trimming	8,581,255
Duplication proportion	0.6013
Proportion reads mapped	0.2351
Exon/intron ratio	6.60377
Unique read proportion	0.15958

**Bidirectionals**
Total # Tfit bidirectionals	8119
# Promoter Tfit bidirectionals	5041
# Intronic Tfit bidirectionals	2766
# Intergenic Tfit bidirectionals	588
Total # dREG bidirectionals	8121
# Promoter dREG bidirectionals	6342
# Intronic dREG bidirectionals	1992
# Intergenic dREG bidirectionals	404
Part of Tfit master merge?	True
Part of dREG master merge?	True