DBNascent | Samples

SRR1648905 Sample ID 2099

**Data sources**
Paper identifier	Puc2015ligand
SRP	SRP049720
Samples	SRR1648905

**Technical details**
QC score	4
Replicate	1
Protocol	PRO-cap
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	31 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	564 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	51
Read depth after trimming	19,377,453
Duplication proportion	0.59388
Proportion reads mapped	0.2857
Exon/intron ratio	5.23529
Unique read proportion	0.304

**Bidirectionals**
Total # Tfit bidirectionals	14847
# Promoter Tfit bidirectionals	7330
# Intronic Tfit bidirectionals	5959
# Intergenic Tfit bidirectionals	1731
Total # dREG bidirectionals	13157
# Promoter dREG bidirectionals	8874
# Intronic dREG bidirectionals	4060
# Intergenic dREG bidirectionals	1018
Part of Tfit master merge?	True
Part of dREG master merge?	True