DBNascent | Samples

SRR1648910 Sample ID 2101

**Data sources**
Paper identifier	Puc2015ligand
SRP	SRP049720
Samples	SRR1648910

**Technical details**
QC score	3
Replicate	4
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	98 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	593 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	46,758,232
Duplication proportion	0.68455
Proportion reads mapped	0.9472
Exon/intron ratio	2.99671
Unique read proportion	0.34517

**Bidirectionals**
Total # Tfit bidirectionals	18791
# Promoter Tfit bidirectionals	9081
# Intronic Tfit bidirectionals	6734
# Intergenic Tfit bidirectionals	2616
Total # dREG bidirectionals	13753
# Promoter dREG bidirectionals	7092
# Intronic dREG bidirectionals	4736
# Intergenic dREG bidirectionals	2110
Part of Tfit master merge?	True
Part of dREG master merge?	True