DBNascent | Samples

SRR1648911 Sample ID 2103

**Data sources**
Paper identifier	Puc2015ligand
SRP accession	SRP049720
GEO accession	GSE63202
Samples	SRR1648911

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	94 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	578 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA Top1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	41,117,646
Duplication proportion	0.65668
Proportion reads mapped	0.9385
Exon/intron ratio	3.00238
Unique read proportion	0.36946

**Bidirectionals**
Total # Tfit bidirectionals	19227
# Promoter Tfit bidirectionals	9004
# Intronic Tfit bidirectionals	7031
# Intergenic Tfit bidirectionals	2865
Total # dREG bidirectionals	13423
# Promoter dREG bidirectionals	6665
# Intronic dREG bidirectionals	4623
# Intergenic dREG bidirectionals	2310
Part of Tfit master merge?	True
Part of dREG master merge?	True