DBNascent | Samples

SRR1648912 Sample ID 2103

**Data sources**
Paper identifier	Puc2015ligand
SRP	SRP049720
Samples	SRR1648912

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	93 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	550 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA Top1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	37,114,660
Duplication proportion	0.62521
Proportion reads mapped	0.948
Exon/intron ratio	2.89212
Unique read proportion	0.40059

**Bidirectionals**
Total # Tfit bidirectionals	17446
# Promoter Tfit bidirectionals	8084
# Intronic Tfit bidirectionals	6418
# Intergenic Tfit bidirectionals	2582
Total # dREG bidirectionals	12764
# Promoter dREG bidirectionals	6390
# Intronic dREG bidirectionals	4440
# Intergenic dREG bidirectionals	2114
Part of Tfit master merge?	True
Part of dREG master merge?	True