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SRR1732573 Sample ID 2314
| Paper identifier | Soccio2015genetic |
| SRP accession | SRP051500 |
| GEO accession | GSE64459 |
| Samples | SRR1732573 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | not noted in GEO or publication |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 56 Mb |
| Stranded gene read counts | TXT file | 922 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 793 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | epididymal white adipose tissue |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | low fat diet | -28 day | 0 day | 28 day |
| Pipeline info and software versions | |
| Sample notes | Mice fed Research Diets D12450B for 4 weeks before tissue isolation |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 66,901,211 |
| Duplication proportion | 0.74612 |
| Proportion reads mapped | 0.349 |
| Exon/intron ratio | 2.69032 |
| Unique read proportion | 0.41557 |
| Total # Tfit bidirectionals | 15654 |
| # Promoter Tfit bidirectionals | 4927 |
| # Intronic Tfit bidirectionals | 6003 |
| # Intergenic Tfit bidirectionals | 2858 |
| Total # dREG bidirectionals | 18415 |
| # Promoter dREG bidirectionals | 8585 |
| # Intronic dREG bidirectionals | 5789 |
| # Intergenic dREG bidirectionals | 3121 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |