DBNascent | Samples

SRR1732573 Sample ID 2314

**Data sources**
Paper identifier	Soccio2015genetic
SRP accession	SRP051500
GEO accession	GSE64459
Samples	SRR1732573

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	56 Mb
Stranded gene read counts	TXT file	922 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	793 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	epididymal white adipose tissue
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	low fat diet	-28 day	0 day	28 day

**Extended notes**
Pipeline info and software versions
Sample notes	Mice fed Research Diets D12450B for 4 weeks before tissue isolation
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	66,901,211
Duplication proportion	0.74612
Proportion reads mapped	0.349
Exon/intron ratio	2.69032
Unique read proportion	0.41557

**Bidirectionals**
Total # Tfit bidirectionals	15654
# Promoter Tfit bidirectionals	4927
# Intronic Tfit bidirectionals	6003
# Intergenic Tfit bidirectionals	2858
Total # dREG bidirectionals	18415
# Promoter dREG bidirectionals	8585
# Intronic dREG bidirectionals	5789
# Intergenic dREG bidirectionals	3121
Part of Tfit master merge?	True
Part of dREG master merge?	True