DBNascent | Samples

SRR1734843 Sample ID 2754

**Data sources**
Paper identifier	Zhang2015enhancer
SRP accession	SRP051547
GEO accession	GSE64515
Samples	SRR1734843

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	119 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	AtT20
Clone/Individual
Strain
Genotype
Construct	siRNA Mash1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	48
Read depth after trimming	50,591,733
Duplication proportion	0.45627
Proportion reads mapped	0.7393
Exon/intron ratio	2.59505
Unique read proportion	0.60954

**Bidirectionals**
Total # Tfit bidirectionals	25477
# Promoter Tfit bidirectionals	9219
# Intronic Tfit bidirectionals	8026
# Intergenic Tfit bidirectionals	6227
Total # dREG bidirectionals	25304
# Promoter dREG bidirectionals	7290
# Intronic dREG bidirectionals	9030
# Intergenic dREG bidirectionals	6989
Part of Tfit master merge?	True
Part of dREG master merge?	True