Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR1734844 Sample ID 2755
| Paper identifier | Zhang2015enhancer |
| SRP accession | SRP051547 |
| GEO accession | GSE64515 |
| Samples | SRR1734844 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 55 Mb |
| Stranded gene read counts | TXT file | 915 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 819 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | AtT20 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA Tbx19 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 48 |
| Read depth after trimming | 31,829,784 |
| Duplication proportion | 0.62063 |
| Proportion reads mapped | 0.6293 |
| Exon/intron ratio | 4.18417 |
| Unique read proportion | 0.43409 |
| Total # Tfit bidirectionals | 25734 |
| # Promoter Tfit bidirectionals | 9857 |
| # Intronic Tfit bidirectionals | 8686 |
| # Intergenic Tfit bidirectionals | 4439 |
| Total # dREG bidirectionals | 18814 |
| # Promoter dREG bidirectionals | 6821 |
| # Intronic dREG bidirectionals | 5423 |
| # Intergenic dREG bidirectionals | 3818 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |