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SRR1772451 Sample ID 1015
| Paper identifier | Illingworth2016polycomb |
| SRP accession | SRP052827 |
| GEO accession | GSE65288 |
| Samples | SRR1772451 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 66 Mb |
| Stranded gene read counts | TXT file | 916 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 6 Mb |
| dREG bidirectional regions | BED file | 547 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | HV1.5 |
| Strain | |
| Genotype | |
| Construct | Hhex-Venus reporter |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | cell sorting HV+ | None | None | None |
| Pipeline info and software versions | |
| Sample notes | HV+ endoderm-primed cells (PrEn); Cells were stained with anti-SSEA1 antibodies and sorted for Venus fluorescence prior to RNA extraction |
| Analysis notes | Unstranded, a little strange-looking |
| Sample QC score | 3 |
| Sample NRO score | 3 |
| Raw read length | 42 |
| Read depth after trimming | 48,907,261 |
| Duplication proportion | 0.78743 |
| Proportion reads mapped | 0.7624 |
| Exon/intron ratio | 6.81452 |
| Unique read proportion | 0.3615 |
| Total # Tfit bidirectionals | 66342 |
| # Promoter Tfit bidirectionals | 1652 |
| # Intronic Tfit bidirectionals | 39522 |
| # Intergenic Tfit bidirectionals | 5639 |
| Total # dREG bidirectionals | 12678 |
| # Promoter dREG bidirectionals | 670 |
| # Intronic dREG bidirectionals | 4396 |
| # Intergenic dREG bidirectionals | 3229 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |