SRR1806553 Sample ID 92

Data sources
Paper identifier Andrade2015dna
SRP accession SRP055100
GEO accession GSE65985
Samples SRR1806553
Technical details
QC score 3
Replicate 2
Protocol Bru-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse True
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 59 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 456 Kb
dREG bidirectional regions BED file 173 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type HF1
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21620 s -21600 s 20 s
Extended notes
Pipeline info and software versions
Sample notes BrU-seq
Analysis notes
Sample metrics
Sample QC score 3
Sample NRO score 1
Raw read length 52
Read depth after trimming 26,307,776
Duplication proportion 0.69629
Proportion reads mapped 0.9704
Exon/intron ratio 2.29049
Unique read proportion 0.44379
Bidirectionals
Total # Tfit bidirectionals 5195
# Promoter Tfit bidirectionals 1632
# Intronic Tfit bidirectionals 2623
# Intergenic Tfit bidirectionals 368
Total # dREG bidirectionals 3986
# Promoter dREG bidirectionals 1588
# Intronic dREG bidirectionals 1711
# Intergenic dREG bidirectionals 389
Part of Tfit master merge? True
Part of dREG master merge? True