DBNascent | Samples

SRR1823901 Sample ID 1944

**Data sources**
Paper identifier	Niskanen2015global
SRP accession	SRP055752
GEO accession	GSE66448
Samples	SRR1823901

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	78 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	481 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	21,680,977
Duplication proportion	0.39115
Proportion reads mapped	0.901
Exon/intron ratio	3.08511
Unique read proportion	0.63219

**Bidirectionals**
Total # Tfit bidirectionals	15147
# Promoter Tfit bidirectionals	6965
# Intronic Tfit bidirectionals	5906
# Intergenic Tfit bidirectionals	1922
Total # dREG bidirectionals	11160
# Promoter dREG bidirectionals	5234
# Intronic dREG bidirectionals	3821
# Intergenic dREG bidirectionals	1969
Part of Tfit master merge?	True
Part of dREG master merge?	True