DBNascent | Samples

SRR1823902 Sample ID 1944

**Data sources**
Paper identifier	Niskanen2015global
SRP	SRP055752
Samples	SRR1823902

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	78 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	505 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	19,643,731
Duplication proportion	0.35234
Proportion reads mapped	0.9495
Exon/intron ratio	2.70226
Unique read proportion	0.67235

**Bidirectionals**
Total # Tfit bidirectionals	16262
# Promoter Tfit bidirectionals	7881
# Intronic Tfit bidirectionals	6073
# Intergenic Tfit bidirectionals	2107
Total # dREG bidirectionals	11704
# Promoter dREG bidirectionals	5479
# Intronic dREG bidirectionals	3901
# Intergenic dREG bidirectionals	2067
Part of Tfit master merge?	True
Part of dREG master merge?	True