DBNascent | Samples

SRR1823904 Sample ID 1947

**Data sources**
Paper identifier	Niskanen2015global
SRP accession	SRP055752
GEO accession	GSE66448
Samples	SRR1823904

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	73 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	687 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	heat shock (43 Celsius)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	16,819,631
Duplication proportion	0.33745
Proportion reads mapped	0.947
Exon/intron ratio	2.92806
Unique read proportion	0.68579

**Bidirectionals**
Total # Tfit bidirectionals	21973
# Promoter Tfit bidirectionals	7645
# Intronic Tfit bidirectionals	9176
# Intergenic Tfit bidirectionals	4412
Total # dREG bidirectionals	15920
# Promoter dREG bidirectionals	5633
# Intronic dREG bidirectionals	6163
# Intergenic dREG bidirectionals	3775
Part of Tfit master merge?	True
Part of dREG master merge?	True