DBNascent | Samples

SRR1873284 Sample ID 2444

**Data sources**
Paper identifier	Telese2015lrp8
SRP accession	SRP056003
GEO accession	GSE66703
Samples	SRR1873284

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	189 Mb
Stranded gene read counts	TXT file	929 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	89,204,346
Duplication proportion	0.57594
Proportion reads mapped	0.7591
Exon/intron ratio	2.21838
Unique read proportion	0.5996

**Bidirectionals**
Total # Tfit bidirectionals	28414
# Promoter Tfit bidirectionals	9320
# Intronic Tfit bidirectionals	9998
# Intergenic Tfit bidirectionals	6163
Total # dREG bidirectionals	27838
# Promoter dREG bidirectionals	7500
# Intronic dREG bidirectionals	11326
# Intergenic dREG bidirectionals	7252
Part of Tfit master merge?	True
Part of dREG master merge?	True